submission_process

Functions

persist_submission_to_database(submission_form)
validate_data_file(submission_form[, data_file])
_save_study(db_session, submission_form)
_save_project(db_session, submission_form)
_save_compartments(db_session, submission_form, study)
_save_communities(db_session, submission_form, study, ...)
_save_experiments(db_session, submission_form, study)
_save_measurement_techniques(db_session, ...)
_save_measurements(db_session, study, submission)
_create_average_measurements(db_session, study, experiment)
_create_average_measurement_context(db_session, ...)
_find_custom_strain(submission, identifier)
_get_expected_column_names(submission_form)
_build_strain(db_session, identifier, submission, ...)
_format_row_list_error(row_list)

Module Contents

submission_process.persist_submission_to_database(submission_form)

submission_process.validate_data_file(submission_form, data_file=None)

submission_process._save_study(db_session, submission_form)

submission_process._save_project(db_session, submission_form)

submission_process._save_compartments(db_session, submission_form, study)

submission_process._save_communities(db_session, submission_form, study, user_uuid)

submission_process._save_experiments(db_session, submission_form, study)

submission_process._save_measurement_techniques(db_session, submission_form, study)

submission_process._save_measurements(db_session, study, submission)

submission_process._create_average_measurements(db_session, study, experiment)

submission_process._create_average_measurement_context(db_session, parent_records, measurement_contexts, average_bioreplicate, subject_id, subject_type)

submission_process._find_custom_strain(submission, identifier)

submission_process._get_expected_column_names(submission_form)

submission_process._build_strain(db_session, identifier, submission, study, user_uuid)

submission_process._format_row_list_error(row_list)