app.model.lib.r_script

Classes

RScript

A generic interface to executing an R script.

Module Contents

class app.model.lib.r_script.RScript(root_path)

A generic interface to executing an R script.

It uses the Rscript executable found in the PATH. It expects to be given a root directory (likely a temporary one) where it’ll look for its input files and produce its outputs.

root_path

rscript_exe = None

run(script_path, *args)

write_csv(filename, df)

write_json(filename, data)

read_key_value_json(filename, key_name, value_name)

read_flat_json(filename, discard_keys=[])

get_r_version()

get_growthrates_version()