app.model.orm.compartment

Attributes

PROPERTY_NAMES	The human-readable names of the properties of a Compartment
PROPERTY_UNITS	The units that properties of a Compartment are measured in

Classes

Compartment

The environment of a particular bioreplicate.

Module Contents

app.model.orm.compartment.PROPERTY_NAMES

The human-readable names of the properties of a Compartment

app.model.orm.compartment.PROPERTY_UNITS

The units that properties of a Compartment are measured in

class app.model.orm.compartment.Compartment

Bases: app.model.orm.orm_base.OrmBase

The environment of a particular bioreplicate.

There could be multiple of these within the same bioreplicate that form a single biological system, but can be measured separately.

One compartment may change to a different compartment due to a Perturbation.

In the future, this entity may be broken down into a separate “compartment” and “environment”.

__tablename__ = 'Compartments'

id: sqlalchemy.orm.Mapped[int]

name: sqlalchemy.orm.Mapped[str]

studyId: sqlalchemy.orm.Mapped[str]

study: sqlalchemy.orm.Mapped[Study]

volume: sqlalchemy.orm.Mapped[decimal.Decimal]

pressure: sqlalchemy.orm.Mapped[decimal.Decimal]

stirringSpeed: sqlalchemy.orm.Mapped[decimal.Decimal]

stirringMode: sqlalchemy.orm.Mapped[str]

O2: sqlalchemy.orm.Mapped[decimal.Decimal]

CO2: sqlalchemy.orm.Mapped[decimal.Decimal]

H2: sqlalchemy.orm.Mapped[decimal.Decimal]

N2: sqlalchemy.orm.Mapped[decimal.Decimal]

inoculumConcentration: sqlalchemy.orm.Mapped[decimal.Decimal]

inoculumVolume: sqlalchemy.orm.Mapped[decimal.Decimal]

initialPh: sqlalchemy.orm.Mapped[decimal.Decimal]

initialTemperature: sqlalchemy.orm.Mapped[decimal.Decimal]

dilutionRate: sqlalchemy.orm.Mapped[decimal.Decimal]

mediumName: sqlalchemy.orm.Mapped[str]

mediumUrl: sqlalchemy.orm.Mapped[str]

experimentCompartments: sqlalchemy.orm.Mapped[List[ExperimentCompartment]]

experiments: sqlalchemy.orm.Mapped[List[Experiment]]

measurementContexts: sqlalchemy.orm.Mapped[List[MeasurementContext]]

measurements: sqlalchemy.orm.Mapped[List[Measurement]]

property properties_description

diff(other)