app.model.orm.study_strain#

Classes#

A microbial strain used in a particular study

Module Contents#

class app.model.orm.study_strain.StudyStrain[source]#

Bases: app.model.orm.orm_base.OrmBase

A microbial strain used in a particular study

__tablename__ = 'StudyStrains'[source]#

id: sqlalchemy.orm.Mapped[int][source]#

name: sqlalchemy.orm.Mapped[str][source]#

description: sqlalchemy.orm.Mapped[str][source]#

defined: sqlalchemy.orm.Mapped[bool][source]#

ncbiId: sqlalchemy.orm.Mapped[int][source]#

studyId: sqlalchemy.orm.Mapped[str][source]#

study: sqlalchemy.orm.Mapped[Study][source]#

userUniqueID: sqlalchemy.orm.Mapped[str][source]#

taxon: sqlalchemy.orm.Mapped[Taxon][source]#

communityStrains: sqlalchemy.orm.Mapped[List[CommunityStrain]][source]#

static search_by_name(db_session, term, page=1, per_page=10)[source]#

__lt__(other)[source]#

isUnknown()[source]#

notUnknown()[source]#

property externalId[source]#: For compatibility with other subjects of measurements. The strain’s (or parent strain’s) NCBI id, e.g. “NCBI:1234”