app.model.orm.study#

Classes#

Study

The main container for a particular scientific study.

Module Contents#

class app.model.orm.study.Study[source]#

Bases: app.model.orm.orm_base.OrmBase

The main container for a particular scientific study.

Updates to experiments and measurements can only be done by issuing a Submission to update a particular study. Access control over the individual experiments is also done at the study level.

It has a fixed publicId identifier starting with the prefix “SMGDB”.

__tablename__ = 'Studies'[source]#

owner_relationship[source]#

publicId: sqlalchemy.orm.Mapped[str][source]#

uuid: sqlalchemy.orm.Mapped[str][source]#

ownerUuid: sqlalchemy.orm.Mapped[str][source]#

owner: sqlalchemy.orm.Mapped[User][source]#

name: sqlalchemy.orm.Mapped[str][source]#

description: sqlalchemy.orm.Mapped[str][source]#

url: sqlalchemy.orm.Mapped[str][source]#

licenseUrl: sqlalchemy.orm.Mapped[str][source]#

timeUnits: sqlalchemy.orm.Mapped[str][source]#

authors: sqlalchemy.orm.Mapped[sqlalchemy.JSON][source]#

authorCache: sqlalchemy.orm.Mapped[str][source]#

projectUuid: sqlalchemy.orm.Mapped[str][source]#

project: sqlalchemy.orm.Mapped[Project][source]#

createdAt: sqlalchemy.orm.Mapped[datetime.datetime][source]#

updatedAt: sqlalchemy.orm.Mapped[datetime.datetime][source]#

publishableAt: sqlalchemy.orm.Mapped[datetime.datetime][source]#

publishedAt: sqlalchemy.orm.Mapped[datetime.datetime][source]#

embargoExpiresAt: sqlalchemy.orm.Mapped[datetime.datetime][source]#

studyUsers: sqlalchemy.orm.Mapped[List[StudyUser]][source]#

experiments: sqlalchemy.orm.Mapped[List[Experiment]][source]#

strains: sqlalchemy.orm.Mapped[List[StudyStrain]][source]#

communities: sqlalchemy.orm.Mapped[List[Community]][source]#

compartments: sqlalchemy.orm.Mapped[List[Compartment]][source]#

studyTechniques: sqlalchemy.orm.Mapped[List[StudyTechnique]][source]#

measurementContexts: sqlalchemy.orm.Mapped[List[MeasurementContext]][source]#

customModels: sqlalchemy.orm.Mapped[List[CustomModel]][source]#

bioreplicates: sqlalchemy.orm.Mapped[List[Bioreplicate]][source]#

measurementTechniques: sqlalchemy.orm.Mapped[List[MeasurementTechnique]][source]#

measurements: sqlalchemy.orm.Mapped[List[Measurement]][source]#

modelingResults: sqlalchemy.orm.Mapped[List[ModelingResult]][source]#

studyMetabolites: sqlalchemy.orm.Mapped[List[StudyMetabolite]][source]#

metabolites: sqlalchemy.orm.Mapped[List[Metabolite]][source]#

lastSubmissionId: sqlalchemy.orm.Mapped[int][source]#

lastSubmission: sqlalchemy.orm.Mapped[Submission][source]#

isPublished()[source]#

property nameWithId[source]#

property isPublishable[source]#

property managerUuids[source]#

visible_to_user(user)[source]#

manageable_by_user(user)[source]#

get_model_info_list()[source]#

find_last_submission(db_session)[source]#

fetch_grouped_measurement_subjects(db_session)[source]#

fetch_experiment_ids_by_measurement_subject(db_session)[source]#

publish(db_session)[source]#

get_cc_code()[source]#: If the license URL is to a Creative Commons license, get the corresponding code to render the appropriate image.

static generate_public_id(db_session)[source]#