app.model.orm.experiment

Classes

Experiment

An entity that describes the design of a particular experiment.

Module Contents

class app.model.orm.experiment.Experiment

Bases: app.model.orm.orm_base.OrmBase

An entity that describes the design of a particular experiment.

The specific measurements of an experiment are connected to its biological replicates (Bioreplicate), which are the concrete implementations of the experimental design.

A published study contains experiments with fixed publicId identifiers starting with the prefix “EMGDB”.

__tablename__ = 'Experiments'

publicId: sqlalchemy.orm.Mapped[str]

name: sqlalchemy.orm.Mapped[str]

description: sqlalchemy.orm.Mapped[str]

bioreplicates: sqlalchemy.orm.Mapped[List[Bioreplicate]]

communityId: sqlalchemy.orm.Mapped[int]

community: sqlalchemy.orm.Mapped[Community]

studyId: sqlalchemy.orm.Mapped[str]

study: sqlalchemy.orm.Mapped[Study]

cultivationMode: sqlalchemy.orm.Mapped[str]

experimentCompartments: sqlalchemy.orm.Mapped[List[ExperimentCompartment]]

compartments: sqlalchemy.orm.Mapped[List[Compartment]]

perturbations: sqlalchemy.orm.Mapped[List[Perturbation]]

measurementContexts: sqlalchemy.orm.Mapped[List[MeasurementContext]]

get_df(db_session)

static generate_public_id(db_session)